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1848
Hall, J., 1848. Catalogue of Specimens in the Geological Department of the Geological Survey. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History, with Catalogue of the Same 1, 39p.
Hall, J., 1848. Catalogue of Specimens in the Mineralogical Department of the Geological Survey. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History, with Catalogue of the Same 1, 21-33.
Hall, J., 1848. Catalogue of Specimens in the Paleontological Department of the Geological Survey. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History, with Catalogue of the Same 1, 15p.
1852
Hall, J., 1852. Comparison of the Geological Features of Tennessee with Those of the State of New York. Proceedings of the American Association for the Advancement of Science 256-259.
1857
Hall, J., 1857. Comments on Prof. Gibbes' Paper on Niagara Falls. Proceedings of the American Association for the Advancement of Science 10, 76-78.
1859
Hall, J., 1859. Contributions to the Palaeontology of New York. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 7-96.
1860
Hall, J., 1860. Contributions to Palaeontology, 1858 and I859. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 13, 53-125.
1861
Hall, J., 1861. Contributions to the Palaeontology of New York Being Some of the Results of Investigations Made During the Years 1859 and 1860. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 14, 87-110.
1862
Hall, J., 1862. Contributions to Palaeontology; Comprising Descriptions of New Species of Fossils from the Helderberg, Hamilton and Chemung Groups. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 15, 27-197.
1863
Hall, J., 1863. Contributions to Palaeontology.. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 16, 17-226.
1867
Hall, J., 1867. Contributions to Palaeontology. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 20, 277-345.
1871
Hall, J., 1871. Cohoes Mastodon. New York State Museum Annual Report 21, 99-148.
1875
Hall, J., Whitfield, R.P., 1875. Crinoidea of the Waverly Group. Ohio Division of Geological Survey Bulletin Rpt 2, 162-179.
Hall, J., Whitfield, R.P., 1875. Crinoids of the Genesee Slate and Cheming Group. Ohio Division of Geological Survey Bulletin Rprt 2, 158-161.
1879
Hall, J., 1879. Corals and Bryozoans of the Lower Helderberg Group. New York State Museum Annual Report 32, 141-176.
1883
Hall, J., 1883. Contributions to the Geological History of the American Continent. Proceedings of the American Association for the Advancement of Science 31, 29-69.